NEWS

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craftgrn 0.1.4

• Added production-oriented Module 3 APIs for regulatory topic modeling: run_topic_modeling(), module3_construct_docs(), module3_train_topic_models(), module3_extract_topics(), and build_module3_qc_report().
• Added reusable Module 3 topic-input caches and compact pass-only topic-link output as the default production behavior.
• Added visualize_topic_modeling_results() and visualize_differential_grns() for standard Module 3 result browsers.

craftgrn 0.1.3

• Fixed Windows incoming pretest failures by normalizing path comparisons in report tests and hardening temporary topic-model fixture directory creation.
• Revised CRAN-facing package metadata wording to reduce incoming spell-check notes for abbreviated scientific terms.

craftgrn 0.1.2

• Initial CRAN submission candidate.
• Added Module 1 TFBS prediction, Module 2 TF-target prediction, and Module 3 regulatory topic modeling workflows.
• Added package-native QC reports and pkgdown documentation.